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ASM197146v1

Organism name:
Xylella fastidiosa subsp. multiplex (g-proteobacteria)
Infraspecific name:
Strain: CFBP8418
BioSample:
SAMN04546487
BioProject:
PRJNA314986
Submitter:
INRA
Date:
2017/01/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001971465.1 (replaced)
RefSeq assembly accession:
GCF_001971465.1 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LUYA01
Assembly method:
Velvet v. 1.2.07; SOAPdenovo v. 2.04
Expected final version:
no
Genome coverage:
125.0x
Sequencing technology:
Illumina MiSeq

IDs: 962811 [UID] 4013538 [GenBank] 4055068 [RefSeq]

See Genome Information for Xylella fastidiosa

There are 226 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/17/2016 11:21:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,368
CDS (total)::2,312
Genes (coding)::2,083
CDS (coding)::2,083
Genes (RNA)::56
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::229
Pseudo Genes (ambiguous residues)::0 of 229
Pseudo Genes (frameshifted)::24 of 229
Pseudo Genes (incomplete)::202 of 229
Pseudo Genes (internal stop)::12 of 229
Pseudo Genes (multiple problems)::8 of 229
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,513,969
Total ungapped length2,513,969
Number of contigs271
Contig N5096,035
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)271

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,513,9692712,513,96996,03500