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XYFPCFBP8072

Organism name:
Xylella fastidiosa subsp. pauca (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CFBP8072
BioSample:
SAMN04075656
BioProject:
PRJNA295541
Submitter:
INRA
Date:
2015/12/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001469345.1 (latest)
RefSeq assembly accession:
GCF_001469345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LKDK01
Assembly method:
Velvet v. 1.2.02
Expected final version:
yes
Genome coverage:
700.0x
Sequencing technology:
Illumina HiSeq

IDs: 596211 [UID] 2726548 [GenBank] 2733138 [RefSeq]

See Genome Information for Xylella fastidiosa

Pathogen Detection Resources

There are 226 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,496,662
Total ungapped length2,496,631
Gaps between scaffolds0
Number of scaffolds278
Scaffold N5087,332
Scaffold L5011
Number of contigs279
Contig N5087,332
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)278

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,496,6622782,496,63187,33210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Xylella fastidiosa subsp. paucaXylella fastidiosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000428665.1Xylella fastidiosa subsp. multiplex ATCC 35871type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000428665.1Xylella fastidiosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.6090.3893.51
Best-match type96.6090.3893.51

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna