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XYFPCFBP8073

Organism name:
Xylella fastidiosa (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CFBP8073
BioSample:
SAMN04075659
BioProject:
PRJNA295547
Submitter:
INRA
Date:
2015/12/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001469395.1 (latest)
RefSeq assembly accession:
GCF_001469395.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LKES01
Assembly method:
Velvet v. 1.2.02; SOAPdenovo v. 1.05
Expected final version:
yes
Genome coverage:
800.0x
Sequencing technology:
Illumina HiSeq

IDs: 596221 [UID] 2726568 [GenBank] 2733058 [RefSeq]

See Genome Information for Xylella fastidiosa

There are 226 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,582,150
Total ungapped length2,582,088
Gaps between scaffolds0
Number of scaffolds328
Scaffold N5067,596
Scaffold L5013
Number of contigs330
Contig N5067,596
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)328

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,582,1503282,582,08867,59620

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Xylella fastidiosaXylella fastidiosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000767565.1Xylella fastidiosatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000767565.1Xylella fastidiosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0090.5992.73
Best-match type99.0090.5992.73

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna