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Source database (GenBank or RefSeq) File type

ASM197147v1

This assembly has been replaced. See current version

Organism name:

Xylella fastidiosa subsp. multiplex (g-proteobacteria)

Infraspecific name:

Strain: CFBP8416

BioSample:

SAMN04546448

BioProject:

PRJNA314983

Submitter:

INRA

Date:

2017/01/25

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

many frameshifted proteins

GenBank assembly accession:

GCA_001971475.1 (replaced)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

LUYC01

Assembly method:

Velvet v. 1.2.07; SOAPdenovo v. 2.04

Expected final version:

Genome coverage:

125.0x

Sequencing technology:

Illumina MiSeq

IDs: 962821 [UID] 4013548 [GenBank]

See Genome Information for Xylella fastidiosa

Pathogen Detection Resources

There are 226 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001971475.2	=	GCF_001971475.1	ASM197147v2	Complete Genome	Latest GenBank, Latest RefSeq
GCA_001971475.1	n/a	n/a	ASM197147v1	Contig	Replaced GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This WGS project has been superceded by the complete genome in (non-WGS) GenBank record CP087993

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::03/17/2016 11:18:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,222
CDS (total)::2,162
Genes (coding)::1,815
CDS (coding)::1,815
Genes (RNA)::60
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::50
ncRNAs::4
Pseudo Genes (total)::347
Pseudo Genes (ambiguous residues)::0 of 347
Pseudo Genes (frameshifted)::258 of 347
Pseudo Genes (incomplete)::110 of 347
Pseudo Genes (internal stop)::33 of 347
Pseudo Genes (multiple problems)::51 of 347
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,466,748
Total ungapped length	2,466,748
Number of contigs	128
Contig N50	113,891
Contig L50	6
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	128

Assembly

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Download Assembly

ASM197147v1

See Genome Information for Xylella fastidiosa

Pathogen Detection Resources

There are 226 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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