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A Study in Entire Chromosomes of Violations of the Intra-strand Parity of Complementary Nucleotides (Chargaff's Second Parity Rule)
Chargaff's rule of intra-strand parity (ISP) between complementary mono/oligonucleotides in chromosomes is well established in the scientific literature. Although a large numbers of papers have bee...
Genome analysis of two novel Pseudomonas strains exhibiting differential hypersensitivity reactions on tobacco seedlings reveals differences in nonflagellar T3SS organization and predicted effector proteins
Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage patterns
Oligonucleotide frequencies were shown to be conserved signatures for bacterial genomes, however, the underlying constraints have yet not been resolved in detail. In this paper we analyzed oligonuc...
Grapevine xylem sap enhances biofilm development by Xylella fastidiosa
Xylella fastidiosa is able to form biofilms within xylem vessels of many, economically important crops. Vessel blockage is believed to be a major contributor to disease development caused by this b...
Identification of new protein-protein interactions involving the products of the chromosome- and plasmid-encoded type IV secretion loci of the phytopathogen Xanthomonas axonopodis pv. citri
The recently sequenced genome of the bacterial plant pathogen Xanthomonas axonopodis pv. citri contains two virB gene clusters, one on the chromosome and one on a 64-kb plasmid, each of which codes...
Intrinsic bent DNA sites in the chromosomal replication origin of Xylella fastidiosa 9a5c
The features of the nucleotide sequences in both replication and promoter regions have been investigated in many organisms. Intrinsically bent DNA sites associated with transcription have been desc...
Plasmid pBP136 from Bordetella pertussis represents an ancestral form of IncP-1 beta plasmids without accessory mobile elements
The complete 41 268 bp nucleotide sequence of the IncP-1 beta plasmid pBP136 from the human pathogen Bordetella pertussis, the primary aetiological agent of whooping cough, was determined and analy...
Sample sequencing of a selected region of the genome of Erwinia carotovora subsp atroseptica reveals candidate phytopathogenicity genes and allows comparison with Escherichia coli
Genome sequencing is making a profound impact on microbiology. Currently, however, only one plant pathogen genome sequence is publicly available and 2 no genome-sequencing project has been initiate...
Structural characterization of the H-NS protein from Xylella fastidiosa and its interaction with DNA
The nucleoid-associated protein H-NS is a major component of the bacterial nucleoid involved in DNA compaction and transcription regulation. The NMR solution structure of the Xylella fastidiosa H-N...
The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa
Employing the biparental exogenous plasmid isolation method, conjugative plasmids conferring mercury resistance were isolated from the microbial community of the rhizosphere of field grown alfalfa ...
